diff --git a/kernel/model/history.go b/kernel/model/history.go
index b5f415f76..265ed4fc0 100644
--- a/kernel/model/history.go
+++ b/kernel/model/history.go
@@ -91,6 +91,8 @@ func ClearWorkspaceHistory() (err error) {
 		logging.LogInfof("removed workspace history dir [%s]", historyDir)
 	}
 
+	sql.InitHistoryDatabase(true)
+
 	// 以下部分是老版本的清理逻辑，暂时保留
 
 	notebooks, err := ListNotebooks()
@@ -534,6 +536,26 @@ func clearOutdatedHistoryDir(historyDir string) {
 			continue
 		}
 		//logging.LogInfof("auto removed history dir [%s]", dir)
+
+		// 清理历史库
+
+		tx, txErr := sql.BeginHistoryTx()
+		if nil != txErr {
+			logging.LogErrorf("begin history tx failed: %s", txErr)
+			return
+		}
+
+		p := strings.TrimPrefix(dir, util.HistoryDir)
+		p = filepath.ToSlash(p[1:])
+		if txErr = sql.DeleteHistoriesByPathPrefix(tx, dir); nil != txErr {
+			sql.RollbackTx(tx)
+			logging.LogErrorf("delete history [%s] failed: %s", dir, txErr)
+			return
+		}
+		if txErr = sql.CommitTx(tx); nil != txErr {
+			logging.LogErrorf("commit history tx failed: %s", txErr)
+			return
+		}
 	}
 }
 
@@ -614,7 +636,7 @@ func indexHistory() {
 		filepath.Walk(entryPath, func(path string, info os.FileInfo, err error) error {
 			if strings.HasSuffix(info.Name(), ".sy") {
 				docs = append(docs, path)
-			} else if strings.Contains(path, "assets"+string(os.PathSeparator)) {
+			} else if strings.Contains(path, "assets/") {
 				assets = append(assets, path)
 			}
 			return nil
@@ -623,29 +645,33 @@ func indexHistory() {
 		var histories []*sql.History
 		for _, doc := range docs {
 			tree, loadErr := loadTree(doc, lutEngine)
-			if nil != err {
+			if nil != loadErr {
 				logging.LogErrorf("load tree [%s] failed: %s", doc, loadErr)
 				continue
 			}
 
 			title := tree.Root.IALAttr("title")
 			content := tree.Root.Content()
+			p := strings.TrimPrefix(doc, util.HistoryDir)
+			p = filepath.ToSlash(p[1:])
 			histories = append(histories, &sql.History{
 				Type:    0,
 				Op:      op,
 				Title:   title,
 				Content: content,
-				Path:    doc,
+				Path:    p,
 				Created: created,
 			})
 		}
 
 		for _, asset := range assets {
+			p := strings.TrimPrefix(asset, util.HistoryDir)
+			p = filepath.ToSlash(p[1:])
 			histories = append(histories, &sql.History{
 				Type:    1,
 				Op:      op,
 				Title:   filepath.Base(asset),
-				Path:    asset,
+				Path:    p,
 				Created: created,
 			})
 		}
@@ -660,5 +686,9 @@ func indexHistory() {
 			sql.RollbackTx(tx)
 			return
 		}
+		if err = sql.CommitTx(tx); nil != err {
+			logging.LogErrorf("commit transaction failed: %s", err)
+			return
+		}
 	}
 }
diff --git a/kernel/sql/database.go b/kernel/sql/database.go
index 5d792c3f6..0439e0e72 100644
--- a/kernel/sql/database.go
+++ b/kernel/sql/database.go
@@ -147,13 +147,27 @@ func initDBTables() {
 }
 
 func InitHistoryDatabase(forceRebuild bool) {
+	initHistoryDBConnection()
+
 	if !forceRebuild && gulu.File.IsExist(util.HistoryDBPath) {
 		return
 	}
 
+	historyDB.Close()
+	if err := os.RemoveAll(util.HistoryDBPath); nil != err {
+		logging.LogErrorf("remove history database file [%s] failed: %s", util.HistoryDBPath, err)
+		return
+	}
+
+	initHistoryDBConnection()
+	initHistoryDBTables()
+}
+
+func initHistoryDBConnection() {
 	if nil != historyDB {
 		historyDB.Close()
 	}
+
 	dsn := util.HistoryDBPath + "?_journal_mode=OFF" +
 		"&_synchronous=OFF" +
 		"&_secure_delete=OFF" +
@@ -172,9 +186,11 @@ func InitHistoryDatabase(forceRebuild bool) {
 	historyDB.SetMaxIdleConns(1)
 	historyDB.SetMaxOpenConns(1)
 	historyDB.SetConnMaxLifetime(365 * 24 * time.Hour)
+}
 
+func initHistoryDBTables() {
 	historyDB.Exec("DROP TABLE histories_fts_case_insensitive")
-	_, err = historyDB.Exec("CREATE VIRTUAL TABLE histories_fts_case_insensitive USING fts5(type UNINDEXED, op UNINDEXED, title, content, path UNINDEXED, created UNINDEXED, tokenize=\"siyuan case_insensitive\")")
+	_, err := historyDB.Exec("CREATE VIRTUAL TABLE histories_fts_case_insensitive USING fts5(type UNINDEXED, op UNINDEXED, title, content, path UNINDEXED, created UNINDEXED, tokenize=\"siyuan case_insensitive\")")
 	if nil != err {
 		logging.LogFatalf("create table [histories_fts_case_insensitive] failed: %s", err)
 	}
diff --git a/kernel/sql/history.go b/kernel/sql/history.go
index ec2f6a99c..a8388d2a6 100644
--- a/kernel/sql/history.go
+++ b/kernel/sql/history.go
@@ -31,6 +31,14 @@ type History struct {
 	Path    string
 }
 
+func DeleteHistoriesByPathPrefix(tx *sql.Tx, pathPrefix string) (err error) {
+	stmt := "DELETE FROM histories_fts_case_insensitive WHERE path LIKE ?"
+	if err = execStmtTx(tx, stmt, pathPrefix+"%"); nil != err {
+		return
+	}
+	return
+}
+
 const (
 	HistoriesFTSCaseInsensitiveInsert = "INSERT INTO histories_fts_case_insensitive (type, op, title, content, path, created) VALUES %s"
 	HistoriesPlaceholder              = "(?, ?, ?, ?, ?, ?)"